derek.holloway
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38 lines
1.5 KiB
Bash
Executable File
38 lines
1.5 KiB
Bash
Executable File
'
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--------------------------------------------------------------------------
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Running as root is *strongly* discouraged as any mistake (e.g., in
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defining TMPDIR) or bug can result in catastrophic damage to the OS
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file system, leaving your system in an unusable state.
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We strongly suggest that you run mpirun as a non-root user.
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You can override this protection by adding the --allow-run-as-root option
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to the cmd line or by setting two environment variables in the following way:
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the variable OMPI_ALLOW_RUN_AS_ROOT=1 to indicate the desire to override this
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protection, and OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 to confirm the choice and
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add one more layer of certainty that you want to do so.
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We reiterate our advice against doing so - please proceed at your own risk.
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--------------------------------------------------------------------------
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'
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MPIRUN=mpirun
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if ! command -v $MPIRUN &> /dev/null
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then
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echo "$MPIRUN could not be found. checking libs"
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if [ -f "/usr/lib64/openmpi/bin/mpirun" ]
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then
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MPIRUN=/usr/lib64/openmpi/bin/mpirun
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else
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if [ -f "/usr/lib64/mpi/gcc/openmpi2/bin/mpirun" ]
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then
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MPIRUN=/usr/lib64/mpi/gcc/openmpi2/bin/mpirun
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else
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echo "$MPIRUN could not be found. exiting"
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exit
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fi
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fi
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fi
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SCRIPT=$(realpath "$0")
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SCRIPTPATH=$(dirname "$SCRIPT")
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$MPIRUN --allow-run-as-root -np 2 $SCRIPTPATH/mpi_vectoradd mdrun -pin on -nsteps 10 -resetstep 9 -ntomp 64 -noconfout -nb gpu -bonded gpu -pme gpu -v -gpu_id 0
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