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110 lines
4.1 KiB
Python
110 lines
4.1 KiB
Python
# Copyright (C) 2021 - 2022 Advanced Micro Devices, Inc. All rights reserved.
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the "Software"), to deal
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# in the Software without restriction, including without limitation the rights
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# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the Software is
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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# THE SOFTWARE.
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"""Performance analysis routines."""
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import random
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import numpy as np
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import statistics
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from perflib.utils import Run
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from dataclasses import dataclass
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from typing import List
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def confidence_interval(vals, measure, confidence, alpha=0.95, nboot=2000):
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"""Compute the alpha-confidence interval for the given values using boot-strap resampling."""
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if confidence == "bootstrap":
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medians = []
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for iboot in range(nboot):
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resample = []
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for i in range(len(vals)):
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resample.append(vals[random.randrange(len(vals))])
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if measure == "median":
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medians.append(np.median(resample))
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elif measure == "mean":
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medians.append(np.mean(resample))
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medians = sorted(medians)
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low = medians[int(np.floor(nboot * 0.5 * (1.0 - alpha)))]
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high = medians[int(np.ceil(nboot * (1.0 - 0.5 * (1.0 - alpha))))]
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elif confidence == "stdev":
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mean = np.mean(vals)
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stdev = np.mean(vals)
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# NB: assumes alpha \approx 95
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low = mean - 2 * stdev
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high = mean + 2 * stdev
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else:
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print("invalid value for confidence:", confidence)
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import sys
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sys.exit(1)
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return low, high
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def ratio_confidence_interval(Avals, Bvals, alpha=0.95, nboot=2000):
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"""Compute the alpha-confidence interval for the ratio of the given sets of values using boot-strap resampling."""
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ratios = []
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for i in range(nboot):
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ratios.append(Avals[random.randrange(len(Avals))] /
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Bvals[random.randrange(len(Bvals))])
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ratios = sorted(ratios)
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low = ratios[int(np.floor(len(ratios) * 0.5 * (1.0 - alpha)))]
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high = ratios[int(np.ceil(len(ratios) * (1.0 - 0.5 * (1.0 - alpha))))]
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return low, high
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@dataclass
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class MoodsResult:
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pval: float
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medians: List[float]
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def moods(reference: Run, others: List[Run]):
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"""Perform Moods analysis..."""
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import scipy.stats
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import numpy
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pvals = {}
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for rname, rdat in reference.dats.items():
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for other in others:
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odat = other.dats[rname]
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for length in rdat.samples.keys():
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s1 = rdat.samples[length].times
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s2 = odat.samples[length].times
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if arguments.method == 'median':
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m1 = statistics.median(s1)
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m2 = statistics.median(s2)
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elif arguments.mesaure == "mean":
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m1 = numpy.mean(s1)
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m2 = numpy.mean(s2)
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if arguments.method == 'moods':
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_, pval, _, _ = scipy.stats.median_test(s1, s2)
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elif arguments.method == 'ttest':
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_, pval = scipy.stats.ttest_ind(s1, s2)
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elif arguments.method == 'mwu':
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_, pval = scipy.stats.mannwhitneyu(s1, s2)
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else:
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print("unsupported statistical method")
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sys.exit(1)
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pvals[other.path.name, rname,
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length] = MoodsResult(pval, [m1, m2])
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return pvals
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